General Ecology

BIOLOGY 321, Spring 2008

 

Dr. Kari Benson

Office:  218 Hobbs Hall, Phone: (434)544-8364

Office Hours: M,W, F 10-11.

Email: benson_k@mail.lynchburg.edu

 

Scheduled Class Times

Lecture: The class meets MWF from 11:00 a.m until 11:50 p.m. in Hobbs 221.

Laboratory: Laboratory meets from 1:00 to 4:00 p.m. on Tuesdays in Hobbs 406. Material covered in the laboratory is instrumental to understanding the lecture material. Therefore, attendance to laboratory is essential.  If you must have an excused absence from a laboratory meeting, please make arrangements prior to the class meeting.   Due to the field nature of this course, some laboratories will exceed the scheduled time.

Absences are excused for acute illness, a family emergency, or a college sponsored event.  Documentation from a physician or a college representative is required for an excused absence. Alternative arrangements for assignments will be made available for students with special needs.  If you will require special dispensation, you must make arrangements during the first two weeks of class.

What is Ecology?

The study of relationships between organisms and their biological and physical surroundings

Why should we care?

From well before you were born, the biological and physical surroundings that your ancestors dealt with influenced you.  Every day, you and every other organism are subject to these factors. The better you understand the ramifications, the better you will be able to make informed decisions.   Because ecology and evolution are inexorably linked, you must understand evolution to fully understand ecology.

Course Objectives

Prerequisite: Junior standing or higher. This is a four-credit course, scheduled for three hours weekly in the classroom and three hours in the laboratory. 

  • Students will be able to describe and explain the major concepts of ecology as demonstrated on homework assignments, quizzes, and tests. 
  • Students will be able to critically examine research from the primary literature as demonstrated by participation and leadership in class discussions and written critiques.
  •  Students will demonstrate their ability to maintain scientific records, test hypotheses and conduct ecological measures as evaluated through laboratory homework and the research paper.   
  • Students will be able to convey information in an appropriate scientific format as demonstrated by the final presentations and a research paper.

 

This course supports goals 1.1, 1.2, 1.3, 1.4, 2.4, 2.5, 3.1, 3.2, 3.3, and 3.5 of the biology program and goals one and three of the environmental science program.

 

Course Content

The lecture material will cover aspects of the text and other outside readings, students are expected to come to class having read the assigned material.  Lectures are an adjunct to a thorough reading of the text, not a substitute.  Class activities are an important aspect to gaining an understanding of the concepts of ecology.  Thus, student activity in discussions, activities, laboratory work, and presentations is crucial.  There will be one extended field trip for which we will visit the entomological labs at Virginia Tech, tentatively scheduled for 19 February. There will be one required overnight trip to the Claytor Nature Study Center in Bedford County, VA (scheduled on 18 April).

Course Description

Prerequisite: Junior standing or higher.  Three hours lecture and three hours laboratory.  This course is a survey of general ecological principles from an evolutionary perspective, incorporating multiple levels of analysis (e.g. population, community, etc.).  Primary emphasis is placed on framing ecological theory in perspective with field models of ecological principles from historical and current research. 

Materials

Karban, R. and M. Huntzinger. 2006.  How to Do Ecology: A Concise Handbook. Princeton University Publishing, Princeton, NJ 

Krohne, David T., 2001. General Ecology, Second Edition.  Wadsworth Publishing Company. New York.

Grading

Your final grade will be determined as follows:

Item:                                                                 Percentage

Three  Tests                                                       30

Final Exam                                                        15

Challenges and Quizzes                                       10

Class Participation                                                5

Lab Assignments                                                10

Research Project and Paper                                 12

Research Presentation                                           5

Discussion Leadership and Participation                 3

Two Critiques                                                    10

Total                                                                 100

 

Tests: There will be three tests, 6 February, 12 March, and 9 April. Each exam will cover material since the previous exam.

Final Exam: The final exam is cumulative.   The scores for any missed tests will be replaced with the grade on the final exam.  The final will be held on 6 May.

Challenges and Quizzes: Quizzes or in-class assignments will be given periodically either to assess student understanding of concepts that we have already covered or to evaluate student preparedness for the class.  These will be concise and designed to insure that you understand the key concepts under consideration.  Quizzes will be unannounced. If the subject matter does not lend itself to an in-class assignment, a take-home assignment designed to allow more consideration will be used rather than an in-class quiz.  The lowest two scores from these assignments will be dropped for the final quiz/challenge average. 

Class Participation: This grade will be determined by the level of thoughtful participation including: contributions to class discussions, class group exercises, laboratory exercises, and independent learning.  Participation in the laboratory also includes clean up of the classroom and any class equipment. 

Lab Assignments: There will be several homework assignments for the laboratory.  I would recommend that you keep these in a laboratory loose-leaf binder. The notebooks and homework assignments will be graded for thoroughness, attention to instructions (both written and oral), and the ability of the student to interpret and present their data. 

Research Project and Paper: All of your project information (planning, schedules, data, data analysis, literary research, and all drafts of the paper) should be kept in a loose-leaf binder.  One research paper will be required. This paper will be used to assess your understanding of the scientific method, your scientific writing skills, and your ability to interpret scientific data in the framework of previous ecological research.   The final grade for this work will  incorporate your team’s ability to meet project deadlines, your paper, your ability to incorporate comments on earlier drafts and your thoroughness in documenting your work in the notebook. 

Research Presentation: Your research team will present the results of your work in a professional format (12 minute talk with three minutes for questions) during the final laboratory meeting.  These presentations will be graded by your student colleagues and your professor.

Discussion Leadership and Participation: Each student will be involved in at least one discussion leadership group.  Discussion leaders will be expected to lead the group in a critical evaluation of a paper from the primary ecological literature.   Your participation in all of the discussions of primary literature will be incorporated in this grade.  These discussions scores will be based both on overall participation and the contribution of thoughtful insights and questions to our analysis of the research discussed.  These discussions are tentatively scheduled for 26 January, 16 February, 2 March, and 23 March.

Critiques:   There will be a series of outside readings for the course.  Students will submit critical evaluations of these papers for two readings

Grading Policy: Students are expected to hand in work on time.  For each day (including Saturday and Sunday) that an assignment is late, 5% of the grade will be deducted from the score.  Assignments that are more than 1 week late will not be accepted.  If you wish to hand in a late assignment, either hand-deliver the assignment or place the assignment into the appropriate mailbox in Hobbs Hall.

Re-evaluation: If you find that you disagree with the grading on any particular question, I will re-evaluate your work.  I will only accept re-evaluation requests in written form, be sure to include your name, the question number, explain why you should have received credit that you did not, and how much additional credit you feel you deserve.  Be sure to attach this form to your original work.  For bookkeeping purposes, all re-evaluation requests must be submitted within 2 days of the return of the work.

 

Use of Calibrated Peer Review:

I will initiate the use of Calibrated Peer Review for a number of assignments during this course.  It is the first time that I am using this resource, so I will expect all of us to work through the learning curve of CPR use together.  It should be understood that there is a learning curve associated with this application (as in any other) and we will have to be patient to become accustomed to its idiosyncrasies.  I intend to use CPR in both the laboratory and the lecture parts of the course. 

CPR allows students to get background material and submit their work online, review some samples to “calibrate” their evaluation skills, evaluate their peers (anonymously) and their own work.  The weight of your peers’ scores of your work will be weighted (or calibrated) based on their acumen at scoring the sample assignments.  Each of the three phases of an assignment will count toward the score that the student receives for their assignment.

There are several aspects of CPR that are new and different.  First, you will each receive a CPR Username and will be required to logon, create your account, and take the pre-test independently.  Your work will be anonymous only as you protect your username.  Second, because of the computer code that drives the scoring of this work and transitions between phases of an assignment, the deadlines are absolute.  If you miss a deadline, you will not be allowed to complete the assignment.  Third, I reserve the right to alter the scores received by your peers if they seem inequitable. 

 

Assignment Instructions: Students can access the course web page for instructions on all course materials.  Additional instruction is available on the web at: http://lasi.lynchburg.edu/benson_k/public/writing/writing.html  This web site includes instructions for writing assignments and the presentation preparation.

Ethical Conduct:

Honor Code: I encourage a free exchange of ideas both in and out of the classroom.  Science is a collaborative endeavor.  However, when a scientist gets help from another scientist, they are expected to acknowledge or reference them fully. A description of what constitutes an honor code violation is available in the catalogue and in the student handbook.  If you are unsure about how to attribute another individual for intellectual contribution to your work, please see an instructor prior to the deadline of the assignment.  Failure to adhere to these rules can result in failure in the course.

Respect: I would like everyone in the class to feel free to express their ideas and opinions. We encourage intellectual controversy and debate in the course, and, thus, demand that everyone's right to different thoughts and opinions be respected, even as we challenge the ideas underlying those opinions.   Treating one another with respect includes arriving in class on time and not distracting fellow students during any course related activities.

Class Web Page

http://benson-k.web.lynchburg.edu/ecology/home.html

The course web page will include news, assignments, and notes to students about the course.

Office hours

I have three scheduled office hours weekly (MWF, 10-11). You are welcome to stop by during these hours if you have any questions or problems with the course materials.  If you feel as though you would benefit from an opportunity to review some material or ask questions individually, please take advantage of this time.  As I realize that these hours will not be convenient for everyone, I would be happy to schedule time with students during other times.  I am available by phone, in my office, or by email to schedule appointments.

Laboratory

We will conduct some of our laboratory exercises outdoors, regardless of the weather, so dress accordingly.  Be prepared for bugs, heat, humidity, cold, wet feet, cold hands, and other field conditions.  I will try to let you know the likely conditions for a given outing.  The order of the labs will be flexible to allow for changes if conditions are not suitable for gathering data. 

Laboratory Exercises

There are several planned laboratory exercises.  The list of exercises is tentative subject to weather and the availability of the necessary organisms for each exercise.  Please check the web page regularly for up-to-date information on the status of the next laboratory project.

 

Background Knowledge:

Ecology is, to a degree, a mathematical enterprise.  I will provide some background for the mathematics.  Students are encouraged to seek help if they are confused about the equations in the course.  As the science of ecology is quantitative, part of this course requires learning appropriate computer skills.  The computer emphasis focuses primarily on model explorations, simple data analysis, and graphing techniques.  Students that are unfamiliar with using spreadsheets or other computer programs are encouraged to seek help.

 

Reading Scientific Papers: Library research is a crucial component to successful research.  Students will learn about library search strategies and each student will search for articles on an assigned topic. Scientific literature is very unlike most other types of reading.  To be successful in this course, you much develop the skills to read articles critically.  There will be some in-class discussion on how to approach this new skill.

 

Required Overnight Exercises:

Diel patterns of abundance: We will spend 24 hours (starting Friday 20 April) sampling invertebrates on the Otter River at the Claytor Nature Study Center.  We will study the diel periodicities of invertebrate abundance.

 

COURSE SCHEDULE

 

Tentative Schedule:

 

Please note that, due to the required cooperation of the weather and wild animals for some of these exercises, the labs are subject change up to the last minute prior to lab.                         

 

Week 1:             Ch. 1,2

            Lab: Scavenger Hunt, Review and Experimental Design

Week 2: Ch. 2,3

            Lab: Bird Vigilance and/or Diving

Week 3: Ch. 3,4

            Lab: Populus

Week 4: Ch. 5, Test 1

            Lab: Cemetery

Week 5: Ch. 5, 6

            Lab: Duckweed Populations, Life History Games

Week 6: Ch. 6

            Lab: Virginia Tech

Week 7: Ch. 7, 8

            Lab: Duckweed Populations (continued), Life History Games (continued) Project Discussion

Week 8: Ch. 8,9

            Lab: Foraging

Week 9: Ch.9, Test 2

            Lab: Biogeography

Week 10:Ch. 10,11

            Lab: Population Ecology

Week 11:Ch. 11,12

            Lab: Diel Sampling

Week 12:Ch. 13,14

            Lab: Fish Collecting

Week 13:Ch. 15, Test 3

            Lab: Foraging Revisited

Week 14:Ch. 16, 17

            Lab: Projects

Week: 15: 18

            Lab: Final Presentations

6 May                            CUMULATIVE FINAL EXAM

 

 

 

Grading Structure:

 

Number Grade

Letter Grade

97-100

A+

93-96

A

90-92

A-

87-89

B+

83-86

B

80-82

B-

77-79

C+

73-76

C

70-72

C-

67-69

D+

63-66

D

60-62

D-

<60

F